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Unreliable Invoices: Solving the Fee Overcharge Problem at the Transaction Level

Learn how fee overcharges occur and discover solutions for transaction-level accuracy.

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Amrit Mohanty

Jun 3, 2025

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Unreliable Invoices: Solving the Fee Overcharge Problem at the Transaction Level

Where there is business, there is invoice. And a business thrives when its invoicing is effective. Yet, despite the best efforts, fee overcharges continue to pose a problem at the transaction level. Did you know that nearly half of all the small-to-medium businesses are held back by payment delays from invoicing errors? And for a quarter of them, that means a $5,000 or more in delayed cash flow every single month.

To make matters worse, merchants pay an average of 2.4% in transaction fees, with smaller businesses paying between 2.5% - 3.5%. This means every single overcharge or miscalculation adds up and directly affects your profits. This blog explores why invoices can’t always be trusted and how to solve the fee overcharge problem at the transaction level.

The Invoice Mirage: Why Errors and Overcharges Slip Through the Cracks

Creating invoices usually involves matching transactions such as project costs or contract items to the right invoice lines. The amounts are calculated either automatically or manually based on some set rules. It is common for errors and overcharges to occur due to manual data entry, outdated pricing, system glitches, or lack of clarity on the contracts.

The most frequent issues are duplicate invoices, incorrect pricing, and calculation mistakes. According to the Institute of Finance and Management, 68% of businesses see errors on over 1% of all invoices. The American Productivity & Quality Center reports an average annual invoice error rate of 2% for manually processed invoices. These kinds of errors create overcharges, especially when the vendors bill for items they did not deliver or charge more than what was originally agreed.

Beyond the Surface: Why Invoice-Level Validation Can’t Catch Hidden Financial Leaks in Complex Transactions

While invoice-level validation is a standard practice, it is increasingly inadequate in today’s complex business ecosystems where transactions span multiple vendors, currencies, and service layers. In environments with high transaction volumes, bundled services, or dynamic pricing, invoice-level checks often miss granular discrepancies—such as hidden markups, unauthorized surcharges, or misallocated fees—because they only verify totals and summary lines, not the underlying transaction data. According to a Ardent Partners report, 61% of finance leaders cite “lack of detailed transaction visibility” as a major challenge in preventing overcharges, and 44% of organizations admit that invoice-level audits fail to detect errors embedded within aggregated line items. Furthermore, companies relying solely on invoice-level controls experience a 25% higher rate of undetected overpayments compared to those using granular transaction-level reconciliation. As business relationships become more layered and global, relying on invoice-level validation alone leaves organizations exposed to costly mistakes and compliance risks.


The Profit Veil: How Fee Manipulation and Manual Processes Drain Business Value

Vendors often maximize profits by charging clients the highest permissible fees, then remitting lower actual costs and pocketing the difference—sometimes accounting for up to a quarter of their income. They may also disguise extra costs through markups, excessive commissions, or mislabeled fees, making it difficult for businesses to spot overcharges.


This challenge is compounded by the fact that 68% of companies still rely on manual invoice entry, with only 32% using automated solutions. Nearly a third of organizations struggle with transparency in invoice details, creating opportunities for unauthorized charges to go unnoticed. The financial impact is significant: processing a manual invoice costs around $15, and undetected overpayments erode profits and damage trust between business partners. Clear transaction-level reconciliation is essential to protect your bottom line.


Detecting and Preventing Fee Overcharges at the Transaction Level

Cross-checking invoices with contracts is essential, as studies show nearly 40% of negotiated supplier cost savings are lost due to non-compliance or human error when invoices are not matched to contract terms. In a recent audit, reviewing 1,100 invoices against contracts uncovered over €800,000 in overcharges—demonstrating the financial impact of rigorous contract validation.

Additionally, nearly 4% of all invoices contain errors, and almost 10% are duplicates, underscoring the need to verify fee statements against internal records. Automated invoicing and spend management tools, especially those powered by AI, can catch errors and duplicates as they happen. They also flag pricing changes or unauthorized fees in real time, helping businesses prevent financial leaks and stay compliant.

Steps to Take When You Discover an Overcharge

Reaching out to the vendor quickly is really important as open communication can help settle up to 84% of disputes through mediation, according to recent data. Having clear paperwork, such as contracts, invoices, and emails, can make a big difference when it comes to resolving issues. In fact, more than half the disputes are decided in favor of the side that has solid evidence.

Keeping detailed records not only helps clear things up faster but is also key for audits and future reference. Well-kept agreements and transaction histories make it easier to fix problems and put your organization in a stronger spot during audits or regulatory reviews.


Strategies to Minimize Future Overcharges

Negotiating clear contracts and maintaining transparent fee statements are foundational for financial control. Manual invoice processes have a 2% annual error rate, but automation reduces this to just 0.8%.

Regularly checking and comparing invoices is really important because 25% of invoice errors still go unnoticed in accounts payable. Using automated tools for invoice validation and spend management can speed up processing by as much as 80% and cut operating costs by around 30%.


Precision at the Source: How Transaction-Level Checks with Optimus Deliver Unmatched Accuracy


Transaction-level validation is vital for safeguarding profits in complex, high-volume environments. Optimus leverages advanced AI to reconcile each transaction against contracts, fee schedules, and real-time data feeds, instantly flagging discrepancies, unauthorized charges, and duplicate entries. By analyzing every fee and adjustment at the most granular level, this approach enables businesses to catch costly errors as they occur and maintain a transparent, auditable record for every payment. Recent case studies show that users have reduced undetected overcharges by up to 90% and cut manual reconciliation time by 75%, setting a new benchmark for financial accuracy, operational efficiency, and compliance .


Conclusion

Trusting invoices at face value leaves organizations vulnerable to fee overcharges, with 41% of companies citing pricing errors and 5–7% of invoices containing unauthorized charges. Shockingly, 73% of invoices are never audited, allowing costly mistakes to slip through undetected.

To mitigate these risks, CFOs of organizations need to take the lead, and encourage vigilance and process improvement to use AI-powered invoice auditing for errors and variances in real-time. The finance leaders need to make audits and automation a required part of the organization to remain vigilant of overcharges on the transaction level. With today's complexity of payments, it’s not just best practice to trust and verify invoices, it’s a must practice!

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